Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015939024.1_cds_XP_016483744.1_74829
CDS Infomation

[gene=LOC107804368] [db_xref=GeneID:107804368] [protein=probable polygalacturonase] [protein_id=XP_016483744.1] [location=join(610..1023,3949..4069,4585..4833,5502..5655,6170..6695)] [gbkey=CDS]
Sequence

ATGACAGATTCTTTCAGATTCCAACACCGTAAACTTGAATACAAGCGTTTGGTTCCATCA
TTTTTGTCGTCTCACCGTACTCTTCTTACTCTTCTTTGGACCGTTGGATTTATTCTGATG
GTCGCTTGGCAAAGGACAGCTGTGGATCGCCTTCTGATGTATCGAGGTTGGGGCCCACCT
CCTCGGCCCATCCCTAAGCTACGGCCTCTAGTCTTAAATCTCTCCGATTTCGGAGCTGTT
GGCGATGGCGTCACTTTAAATACAAAGGCATTCGAAAGGGCAATATCGGAAATTCGAAAG
CGAGGTGGCGGCCAGCTCAACATTGAGCCTGGTTATTGGCTCACGGCGCCGTTTAATCTC
ACTAGCCACATGACGCTCTTCTTAGCTGAAAATGCCGTTATACTTGGAATTGATGACGAG
AGCTATTGGCCACTATTGCCTCCTTTGCCATCATATGGTTATGGAAGAGAACGTCGTGGG
CCACGCTATGGAAGTTTAATCCATGGGCAAAATCTTAAGGATGTCGTCATAACAGGCCAT
AATGGTACCATTGACGGGCAAGGCCGATCGTGGTGGGAGAAATACCGCAGAAAGCTTTTG
AATCACACAAGGGGCCCACTTCTTCAACTTCTGTGGTCGAAAGACATTCACATTTCTGAT
GTTACATTCCGTGATTCTCCATTCTGGACTATCCACCCTTACGACTGCCAAAATGTTATT
ATCAGAAATGTAACTATTTTGGCTCCATTGTCTGATGCCCCAAACACTGATGGAATAGAC
CCTGATTCGTGCGAGAATATGGTGATAGAGGATTGTTATATAAGTGTGGGGGATGATGGA
GTTGCAATCAATAGTGGCTGGGATCAGTATGGAATTGCATATTCCCGGCCTTCTTCCAAC
ATCACTATCCGTAACCTCATAGTCCGCTCAATGATTAGTGCAGGAGTATCAATTGGAAGT
GAAATGTCTGGTGGAGTGTCAAATATAGTAGTGGAGAATCTCCTTGTATGGAACTCAAAA
AGAGGTATAAGAATTAAAACTAGCCCGGGTAGGGGTGGTCATATTCGACATGTAAGCTAC
CGCAACCTGACACTAGAGAACGTTCGTGTGGGCATTGTAATTAAGACTGATTACAATGAG
CATCCTGATGAAGGTTATGATCCAAAAGCCCTTCCAGTTATTGAGGATATAAGCTTTACT
GGTATTCGTGGACAAGGAGTTCGAATACCAGCACGTATTTATGGAAGCCCTGAGATTCCT
GTTCAGAATATTACTTTTCAGGACATGTCCGTTGGAATAACATACAAGAAGAAGCATATC
TTCCAATGTTCTTTTGTTCAAGGACGTGTTATTGGAAGAATCTTCCCTGCCCCATGTGAG
AATCTTGATTTATATGATGATGGAGGAAAACTACTTAGGCGAGCAACAACACAGGATACG
AAGGACTTGGATTATGATGGTTGA

Peptide Sequence

PEP ID

XP_016483744.1
PEP Infomation

PREDICTED: probable polygalacturonase [Nicotiana tabacum]
Sequence

MTDSFRFQHRKLEYKRLVPSFLSSHRTLLTLLWTVGFILMVAWQRTAVDRLLMYRGWGPP
PRPIPKLRPLVLNLSDFGAVGDGVTLNTKAFERAISEIRKRGGGQLNIEPGYWLTAPFNL
TSHMTLFLAENAVILGIDDESYWPLLPPLPSYGYGRERRGPRYGSLIHGQNLKDVVITGH
NGTIDGQGRSWWEKYRRKLLNHTRGPLLQLLWSKDIHISDVTFRDSPFWTIHPYDCQNVI
IRNVTILAPLSDAPNTDGIDPDSCENMVIEDCYISVGDDGVAINSGWDQYGIAYSRPSSN
ITIRNLIVRSMISAGVSIGSEMSGGVSNIVVENLLVWNSKRGIRIKTSPGRGGHIRHVSY
RNLTLENVRVGIVIKTDYNEHPDEGYDPKALPVIEDISFTGIRGQGVRIPARIYGSPEIP
VQNITFQDMSVGITYKKKHIFQCSFVQGRVIGRIFPAPCENLDLYDDGGKLLRRATTQDT
KDLDYDG

Transcript Sequence

Gene sequence data has not been registered.